Training Center


Toxic Nitrogen Forms in Fresh Organic Growing Media?

 PDF version of this text: Toxic Nitrogen Forms in Fresh Organic Growing Media?

Toxic Nitrogen forms

If you formulate an organic growing medium by adding starter organic fertilizers, the growing medium should not be used immediately. It should be allowed to “rest” for 2-4 weeks before using it.

The reason is simple: When you add starter organic fertilizers, various microorganism populations that are required to break down complex organic materials into intermediary forms of nitrogen need time to build up. The nitrogen conversion process might not be completed in a freshly produced growing medium. Until this occurs, there is a possibility that toxic, intermediary forms of nitrogen accumulate in the growing medium until another group of microorganisms build up to continue the nitrogen conversion process.

The Process for the Conversion of Organic Proteins into Nitrogen

Step 1: Nitrogen Mineralization

As mentioned, when organic fertilizers are blended into a growing medium, the population of microbes that convert organic proteins found in fertilizers into useable forms of nitrogen must build up. The first step in the breakdown of nitrogen into a usable form occurs through a process known as “mineralization”. During mineralization, microbes start by converting organic matter proteins into ammonia (NH3), which is toxic to plants at levels greater than 2-8 ppm (Figure 1). Mineralization further continues through a different group of microorganisms in which ammonia (NH3) is converted into ammonium (NH4+) (Figure 1). Although ammonium is used by plants, it can accumulate to unhealthy levels for proper plant growth.

Mineralization of organic matters PRO-MIX

“Figure 1. Mineralization of organic matter proteins into usable ammonium through microbial breakdown.” 

Step 2: Nitrogen Nitrification

After mineralization is completed, nitrification begins. During nitrification, ammonium is converted by microorganisms into nitrite (NO2-), which is toxic to plants at a few parts per million. Then nitrite is further converted to nitrate (NO3-) by other bacteria (Figure 2). It takes about 2-4 weeks for the microorganism populations to build up and convert organic proteins into usable nitrogen. After this time, the growing medium should be “stabilized” and there only should be minor levels of ammonia and nitrite at any given time.

Nitrification of ammonium into nitrate through soil bacteria PRO-MIX

 “Figure 2. Nitrification of ammonium into nitrate through soil bacteria.”

Modification in The Conversion Process

Since microorganisms are responsible for nitrogen mineralization and nitrification, these processes can be sped up or slowed down based on the following:

  1. Microorganisms are most active at warm temperatures. Growing medium temperatures below 55oF (13oC) slow down nitrogen conversion so ammonia and/or nitrite can accumulate in the growing medium, causing crop damage. Therefore, it is best to wait at least 4 weeks before seed sowing or planting if the growing medium is stored in cold conditions (below 40oF / 4oC).
  2. It takes time to build microbe populations, so depending on the “sterile” nature of the components, it may take longer to build up these microorganisms. If it takes longer, then the “resting” period must also be longer.
  3. A growing medium with a pH above 7.5 or a poor oxygen supply greatly slows nitrification, allowing for the buildup of ammonia and ammonium.

If you want to learn more about nitrogen: Nitrogen's Influence on Growing Medium pH.

For more information about organic growing media, contact your Premier Tech Grower Services Representative:


   Ed Bloodnick           Nathan Wallace-Springer           Lance Lawson           Victor Brantly

Ed Bloodnick
Horticulture Director
South Eastern US,
Japan and Overseas 

Nathan Wallace-Springer
Horticulture Specialist
South Eastern US

Lance Lawson
Horticulture Specialist
Western US
and Western Canada

Victor Brantly
Horticulture Specialist
Central US

Troy Buechel Susan Parent  Jose Chen Lopez  

Troy Buechel
Horticulture Specialist
Eastern and
North Eastern US

Susan Parent
Horticulture Specialist
Eastern Canada and
North Eastern US 

Jose Chen Lopez
Horticulture Specialist
Mexico and
South Western US




  • Fisher, P., J. Huang, M. Paz and R. Dickson. 2016. "Having Success with Organic Growing Mixes." Grower Talks. Feb 2016, 68-72.
  • Pitchay, Dharmalingam and Gunawati Gunawan. 2017. "Detrimental Effects of Blood Meal and Feather Meal on Tomato (Solanum lycopersicon L.) Seed Germination." Hortscience 52(1): 138-141.

PRO-MIX® is a registered trademark of PREMIER HORTICULTURE Ltd.

Related Articles

Your 2021 season full package

Get full access to all the information you need to start the season on the right foot.

Customer Service / Sales:
1 855 867-5407

Grower Services:
1 800 424-2554